mkatari-bioinformatics-august-2013
Manny's Bioinformatics Workshop
Manny's workshop:
- Introduction to Linux
- Recommended software
- Alan's information about the Cluster Using the cluster
- Alan's information about how to use SLURM Using SLURM
- More notes on shell scripts and writing SLURM batch files More Slurm
- Introduction to Sequence Technology
- Introduction to Sequence Alignment
- SNP analysis
- Running samtools mpileup mpileup notes
- Preparing files for GATK and running GATK GATK notes
- Getting snps from a specific region VCF region
- Visualizing your alignments
- Introduction to Mapping and Sequence Assembly
- Introduction to RNA-seq
Manny's R Lectures:
- R Objects and Read/Write Files
- Writing Functions in R
- Introduction to Statistics
- Plotting using R
- Data cleaning and working with packages
- Differential Gene Expression using DESeq
- Clustering and GeneSet Enrichment analysis
mkatari-bioinformatics-august-2013.txt · Last modified: by mkatari