Transcript assembly and quantification for RNA-Seq. A fork of the earlier tool of the same name by Johns Hopkins.

• Version: 2.2.1
• Added: May, 2022
• Updated: November, 2023
• Link: https://github.com/gpertea/stringtie

See versions which are available:

$ module avail stringtie2

Load one version into your environment and run it:

$ module load stringtie2/2.2.1
$ stringtie -h

Notes from the sysadmin during installation:

$ cd /tmp
$ git clone https://github.com/gpertea/stringtie.git -b v2.2.1
$ make release
$ sudo mkdir -p /export/apps/stringtie2/2.2.1/bin
$ sudo cp stringtie /export/apps/stringtie2/2.2.1/bin