ILRI Research Computing

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====== stringtie2 ======
Transcript assembly and quantification for RNA-Seq. A fork of the [[http://ccb.jhu.edu/software/stringtie/#news|earlier tool of the same name by Johns Hopkins]].

===== Information =====

  * Version: 2.2.1
  * Added: May, 2022
  * Updated: November, 2023
  * Link: https://github.com/gpertea/stringtie

===== Usage =====

See versions which are available:
<code>$ module avail stringtie2</code>

Load one version into your environment and run it:
<code>$ module load stringtie2/2.2.1
$ stringtie -h</code>

===== Installation ======
Notes from the sysadmin during installation:

<code>$ cd /tmp
$ git clone https://github.com/gpertea/stringtie.git -b v2.2.1
$ make release
$ sudo mkdir -p /export/apps/stringtie2/2.2.1/bin
$ sudo cp stringtie /export/apps/stringtie2/2.2.1/bin</code>