stringtie-software
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Table of Contents
stringtie
StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts.
Information
- Version: 1.0.2
- Added: July, 2014
- Updated: March, 2015
Usage
See versions of stringtie which are available
$ module avail stringtie
Load latest version and print help
$ module load stringtie/1.0.2 $ stringtie -h
Installation
Notes from the sysadmin during installation:
$ cd /tmp $ wget http://ccb.jhu.edu/software/stringtie/dl/stringtie-1.0.4.tar.gz $ scl enable devtoolset-3 bash $ tar xf stringtie-1.0.4.tar.gz $ cd stringtie-1.0.4 $ scl enable devtoolset-3 bash $ make release $ sudo mkdir -p /export/apps/stringtie/1.0.4/bin $ sudo cp stringtie /export/apps/stringtie/1.0.4/bin $ sudo cp LICENSE README /export/apps/stringtie/1.0.4
stringtie-software.1438678925.txt.gz · Last modified: 2015/08/04 09:02 by aorth