stringtie-software
Table of Contents
stringtie
StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts.
Information
- Version: 1.3.4d
- Added: July, 2014
- Updated: June, 2018
Usage
See versions of stringtie which are available:
$ module avail stringtie
Load the latest version into your environment and print help:
$ module load stringtie/1.3.4d $ stringtie -h
Installation
Notes from the sysadmin during installation:
$ cd /tmp $ wget http://ccb.jhu.edu/software/stringtie/dl/stringtie-1.3.4d.tar.gz $ tar xf stringtie-1.3.4d.tar.gz $ cd stringtie-1.3.4d $ make release $ sudo mkdir -p /export/apps/stringtie/1.3.4d/bin $ sudo cp stringtie /export/apps/stringtie/1.3.4d/bin $ sudo cp README LICENSE /export/apps/stringtie/1.3.4d
stringtie-software.txt · Last modified: 2018/06/11 15:52 by aorth