ILRI Research Computing

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====== stringtie ======
StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts.

===== Information =====

  * Version: 1.3.4d
  * Added: July, 2014
  * Updated: June, 2018
  * Link: https://ccb.jhu.edu/software/stringtie/

===== Usage =====

See versions of stringtie which are available:
<code>$ module avail stringtie</code>

Load the latest version into your environment and print help:
<code>$ module load stringtie/1.3.4d
$ stringtie -h</code>

===== Installation ======
Notes from the sysadmin during installation:

<code>$ cd /tmp
$ wget http://ccb.jhu.edu/software/stringtie/dl/stringtie-1.3.4d.tar.gz
$ tar xf stringtie-1.3.4d.tar.gz
$ cd stringtie-1.3.4d
$ make release
$ sudo mkdir -p /export/apps/stringtie/1.3.4d/bin
$ sudo cp stringtie /export/apps/stringtie/1.3.4d/bin
$ sudo cp README LICENSE /export/apps/stringtie/1.3.4d</code>