StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts.

• Version: 0.98
• Added: July, 2014
• Updated: November, 2014
• Link: http://ccb.jhu.edu/software/stringtie/

module avail stringtie

Notes from the sysadmin during installation:

cd /tmp
wget http://ccb.jhu.edu/software/stringtie/dl/stringtie-0.98.tar.gz
tar xf stringtie-0.98.tar.gz
cd stringtie-0.98
scl enable devtoolset-2.0 bash
make release
sudo mkdir -p /export/apps/stringtie/0.98/bin
sudo cp stringtie /export/apps/stringtie/0.98/bin