• Version: 0.97
• Added: July, 2014
• Link: http://ccb.jhu.edu/software/stringtie/

module avail stringtie

Notes from the sysadmin during installation:

wget http://ccb.jhu.edu/software/stringtie/dl/stringtie-0.97.tar.gz
tar xf stringtie-0.97.tar.gz
cd stringtie-0.97
scl enable devtoolset-1.1 bash
sed -i 's/SEARCHDIRS := -I. -I${GDIR} -I${BAM}/SEARCHDIRS := -I. -I${GDIR} -I\/export\/apps\/samtools\/0.1.19\/include\/bam/' Makefile
sed -i 's/LDFLAGS := -g -L${BAM} ${LFLAGS}/LDFLAGS := -g -L\/export\/apps\/samtools\/0.1.19\/lib ${LFLAGS}/' Makefile
make release
sudo mkdir -p /export/apps/stringtie/0.97/bin
sudo cp stringtie /export/apps/stringtie/0.97/bin