SSPACE-longread is a stand-alone program for scaffolding pre-assembled contigs using long reads.

• Latest Version: 1.1
• Added: November, 2016
• Link: https://www.baseclear.com/genomics/bioinformatics/basetools/SSPACE-longread

See which versions of sspace-longread are available:

$ module avail longread

Load sspace-longread

$ module load sspace-longread/1.1

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://www.baseclear.com/base/download/40SSPACE-LongRead_v1-1.tar.gz
$ tar -xvf 40SSPACE-LongRead_v1-1.tar.gz
$ cd SSPACE-LongRead_v1-1
$ dos2unix SSPACE-LongRead.pl
$ sudo mkdir -p /export/apps/sspace-longread/1.1
$ sudo cp -r . /export/apps/sspace-longread/1.1/