ILRI Research Computing

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====== SSPACE-longread ======

SSPACE-longread is a stand-alone program for scaffolding pre-assembled contigs using long reads.

===== Information =====

  * Latest Version: 1.1
  * Added: November, 2016
  * Link: https://www.baseclear.com/genomics/bioinformatics/basetools/SSPACE-longread
  
===== Usage =====

See which versions of sspace-longread are available:
<code>$ module avail longread
</code>

Load sspace-longread
<code>$ module load sspace-longread/1.1</code>

===== Installation ======

Notes from the sysadmin during installation:

<code>
$ cd /tmp
$ wget https://www.baseclear.com/base/download/40SSPACE-LongRead_v1-1.tar.gz
$ tar -xvf 40SSPACE-LongRead_v1-1.tar.gz
$ cd SSPACE-LongRead_v1-1
$ dos2unix SSPACE-LongRead.pl
$ sudo mkdir -p /export/apps/sspace-longread/1.1
$ sudo cp -r . /export/apps/sspace-longread/1.1/
</code>