srprism-software
Table of Contents
srprism
Single Read Paired Read Indel Substitution Minimizer.
Information
- Version: 3.1.2
- Added: March, 2022
Usage
See versions which are available:
$ module avail srprism
Load one version into your environment and run it:
$ module load srprism/3.1.2 $ srprism
Installation
Notes from the sysadmin during installation:
$ git clone https://github.com/ncbi/SRPRISM $ cd SRPRISM/srprism $ git checkout v3.1.2 $ export NGS_HOME=/export/apps/ngs-tools/3.0.0 $ export VDB_HOME=/export/apps/ncbi-vdb/3.0.0 $ make $ sudo mkdir -p /export/apps/srprism/3.1.2/bin $ sudo mkdir -p /export/apps/srprism/3.1.2/bin $ sudo cp app/srprism /export/apps/srprism/3.1.2/bin
Requires ngs-tools and ncbi-vdb also (compiled separately into /export/apps).
srprism-software.txt · Last modified: 2022/03/18 11:51 by aorth