ILRI Research Computing

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====== srprism ======
Single Read Paired Read Indel Substitution Minimizer.

===== Information =====

  * Version: 3.1.2
  * Added: March, 2022
  * Link: https://github.com/ncbi/SRPRISM

===== Usage =====

See versions which are available:
<code>$ module avail srprism</code>

Load one version into your environment and run it:

<code>$ module load srprism/3.1.2
$ srprism</code>

===== Installation ======
Notes from the sysadmin during installation:

<code>$ git clone https://github.com/ncbi/SRPRISM
$ cd SRPRISM/srprism
$ git checkout v3.1.2
$ export NGS_HOME=/export/apps/ngs-tools/3.0.0
$ export VDB_HOME=/export/apps/ncbi-vdb/3.0.0
$ make
$ sudo mkdir -p /export/apps/srprism/3.1.2/bin
$ sudo mkdir -p /export/apps/srprism/3.1.2/bin
$ sudo cp app/srprism /export/apps/srprism/3.1.2/bin</code>

Requires ngs-tools and ncbi-vdb also (compiled separately into /export/apps).