MetaEuk is a modular toolkit designed for large-scale gene discovery and annotation in eukaryotic metagenomic contigs. MetaEuk combines the fast and sensitive homology search capabilities of MMseqs2 with a dynamic programming procedure to recover optimal exons sets. It reduces redundancies in multiple discoveries of the same gene and resolves conflicting gene predictions on the same strand.
See versions of metaeuk which are available:
$ module avail metaeuk
Load one version into your environment and run it:
$ module load metaeuk/git-9818d1a5 $ metaeuk
Notes from the sysadmin during installation:
$ cd /tmp $ wget https://mmseqs.com/metaeuk/metaeuk-linux-sse41.tar.gz $ sudo mkdir -p /export/apps/metaeuk/git-9818d1a5