ILRI Research Computing

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====== metaeuk ======
MetaEuk is a modular toolkit designed for large-scale gene discovery and annotation in eukaryotic metagenomic contigs. MetaEuk combines the fast and sensitive homology search capabilities of MMseqs2 with a dynamic programming procedure to recover optimal exons sets. It reduces redundancies in multiple discoveries of the same gene and resolves conflicting gene predictions on the same strand.

===== Information =====

  * Latest Version: git-9818d1a5
  * Added: January, 2022
  * Link: https://github.com/soedinglab/metaeuk

===== Usage =====

See versions of metaeuk which are available:
<code>$ module avail metaeuk</code>

Load one version into your environment and run it:
<code>$ module load metaeuk/git-9818d1a5
$ metaeuk</code>

===== Installation ======
Notes from the sysadmin during installation:

<code>$ cd /tmp
$ wget https://mmseqs.com/metaeuk/metaeuk-linux-sse41.tar.gz
$ sudo mkdir -p /export/apps/metaeuk/git-9818d1a5</code>