Hitting associations with k-mers.

• Version: git-a177811d (~1.7.0)
• Added: February, 2022
• Link: https://github.com/atifrahman/HAWK

See versions of hawk that are available:

$ module avail hawk

Load one version into your environment and run it:

$ module load hawk/git-a177811d
$ hawk

The HAWK documentation recommends using the runHawk and runAbyss scripts for certain workflows. You must copy them from the global location to your working directory.

Notes from the sysadmin during installation.

$ cd /tmp
$ git clone https://github.com/atifrahman/HAWK.git
$ cd HAWK
$ git checkout a177811d9723287ea26bd1d4c5de252e4618eb05 # this is version 1.7.0 apparently
$ scl enable devtoolset-7 bash
$ make
$ sudo mkdir -p /export/apps/hawk/git-a177811d
$ sudo chown aorth /export/apps/hawk/git-a177811d
$ make clean
$ cp -r * /export/apps/hawk/git-a177811d
$ cd supplements
$ tar xf jellyfish-2.2.10-HAWK.tar.gz
$ cd jellyfish-2.2.10
$ ./configure --prefix=/export/apps/hawk/git-a177811d
$ make
$ make install
$ cd ..
$ tar xf EIG6.0.1-Hawk.tar.gz
$ sudo cp -r EIG6.0.1-Hawk /export/apps/hawk/git-a177811d
$ <edit paths to abyss, hawk, and eigenstrat in runAbyss and runHawk>
$ sudo cp runAbyss runHawk /export/apps/hawk/git-a177811d/supplements
$ sudo chown -R root:root /export/apps/hawk/git-a177811d