ILRI Research Computing

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====== hawk ======
Hitting associations with k-mers.

===== Information =====

  * Version: git-a177811d (~1.7.0)
  * Added: February, 2022
  * Link: https://github.com/atifrahman/HAWK

===== Usage =====

See versions of hawk that are available:
<code>$ module avail hawk</code>

Load one version into your environment and run it:
<code>$ module load hawk/git-a177811d
$ hawk</code>

The [[https://github.com/atifrahman/HAWK|HAWK documentation]] recommends using the ''runHawk'' and ''runAbyss'' scripts for certain workflows. You must copy them from the global location to your working directory:

  * ''/export/apps/hawk/git-a177811d/supplements/runHawk''
  * ''/export/apps/hawk/git-a177811d/supplements/runAbyss''
===== Installation ======
Notes from the sysadmin during installation.

<code>$ cd /tmp
$ git clone https://github.com/atifrahman/HAWK.git
$ cd HAWK
$ git checkout a177811d9723287ea26bd1d4c5de252e4618eb05 # this is version 1.7.0 apparently
$ scl enable devtoolset-7 bash
$ make
$ sudo mkdir -p /export/apps/hawk/git-a177811d
$ sudo chown aorth /export/apps/hawk/git-a177811d
$ make clean
$ cp -r * /export/apps/hawk/git-a177811d
$ cd supplements
$ tar xf jellyfish-2.2.10-HAWK.tar.gz
$ cd jellyfish-2.2.10
$ ./configure --prefix=/export/apps/hawk/git-a177811d
$ make
$ make install
$ cd ..
$ tar xf EIG6.0.1-Hawk.tar.gz
$ sudo cp -r EIG6.0.1-Hawk /export/apps/hawk/git-a177811d
$ <edit paths to abyss, hawk, and eigenstrat in runAbyss and runHawk>
$ sudo cp runAbyss runHawk /export/apps/hawk/git-a177811d/supplements
$ sudo chown -R root:root /export/apps/hawk/git-a177811d</code>