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Hitting associations with k-mers.



See versions of hawk that are available:

$ module avail hawk

Load one version into your environment and run it:

$ module load hawk/git-a177811d
$ hawk

The HAWK documentation recommends using the runHawk and runAbyss scripts for certain workflows. You must copy them from the global location to your working directory:

  • /export/apps/hawk/git-a177811d/supplements/runHawk
  • /export/apps/hawk/git-a177811d/supplements/runAbyss


Notes from the sysadmin during installation.

$ cd /tmp
$ git clone
$ cd HAWK
$ git checkout a177811d9723287ea26bd1d4c5de252e4618eb05 # this is version 1.7.0 apparently
$ scl enable devtoolset-7 bash
$ make
$ sudo mkdir -p /export/apps/hawk/git-a177811d
$ sudo chown aorth /export/apps/hawk/git-a177811d
$ make clean
$ cp -r * /export/apps/hawk/git-a177811d
$ cd supplements
$ tar xf jellyfish-2.2.10-HAWK.tar.gz
$ cd jellyfish-2.2.10
$ ./configure --prefix=/export/apps/hawk/git-a177811d
$ make
$ make install
$ cd ..
$ tar xf EIG6.0.1-Hawk.tar.gz
$ sudo cp -r EIG6.0.1-Hawk /export/apps/hawk/git-a177811d
$ <edit paths to abyss, hawk, and eigenstrat in runAbyss and runHawk>
$ sudo cp runAbyss runHawk /export/apps/hawk/git-a177811d/supplements
$ sudo chown -R root:root /export/apps/hawk/git-a177811d
hawk-software.txt · Last modified: 2022/02/16 14:21 by aorth