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Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.



See which versions are available:

$ module avail ete

Load one version into your environment and run it:

$ module load ete/3.1.2
$ ete3


Notes from the sysadmin during installation:

$ sudo mkdir -p /export/apps/ete/3.1.2
$ sudo chown aorth /export/apps/ete/3.1.2
$ module load python/3.9
$ python -m venv /export/apps/ete/3.1.2
$ source /export/apps/ete/3.1.2/bin/activate
$ pip install --upgrade setuptools pip
$ pip install ete3 six numpy lxml pyqt5
$ sudo chown -R root:root /export/apps/ete/3.1.2

Note this discussion about problems with PyQt4:

ete-software.txt · Last modified: 2022/03/14 08:58 by aorth