Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

• Version: 3.1.2
• Added: March, 2022
• Link: https://github.com/etetoolkit/ete/

See which versions are available:

$ module avail ete

Load one version into your environment and run it:

$ module load ete/3.1.2
$ ete3

Notes from the sysadmin during installation:

$ sudo mkdir -p /export/apps/ete/3.1.2
$ sudo chown aorth /export/apps/ete/3.1.2
$ module load python/3.9
$ python -m venv /export/apps/ete/3.1.2
$ source /export/apps/ete/3.1.2/bin/activate
$ pip install --upgrade setuptools pip
$ pip install ete3 six numpy lxml pyqt5
$ sudo chown -R root:root /export/apps/ete/3.1.2

Note this discussion about problems with PyQt4: https://github.com/etetoolkit/ete/issues/195