ILRI Research Computing

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====== ete ======
Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

===== Information =====

  * Version: 3.1.2
  * Added: March, 2022
  * Link: https://github.com/etetoolkit/ete/

===== Usage =====

See which versions are available:
<code>$ module avail ete</code>

Load one version into your environment and run it:

<code>$ module load ete/3.1.2
$ ete3</code>

===== Installation ======
Notes from the sysadmin during installation:

<code>$ sudo mkdir -p /export/apps/ete/3.1.2
$ sudo chown aorth /export/apps/ete/3.1.2
$ module load python/3.9
$ python -m venv /export/apps/ete/3.1.2
$ source /export/apps/ete/3.1.2/bin/activate
$ pip install --upgrade setuptools pip
$ pip install ete3 six numpy lxml pyqt5
$ sudo chown -R root:root /export/apps/ete/3.1.2</code>

Note this discussion about problems with PyQt4: https://github.com/etetoolkit/ete/issues/195