An efficient way to convert gff3 annotation files into EMBL format ready to submit.

• Version: 2.1
• Added: May, 2022
• Link: https://github.com/NBISweden/EMBLmyGFF3

See versions which are available:

$ module avail emblmygff3

Load one version into your environment and run it:

$ module load emblmygff3/2.1
$ EMBLmyGFF3

Notes from the sysadmin during installation:

$ sudo mkdir -p /export/apps/emblmygff3/2.1
$ sudo chown aorth:aorth /export/apps/emblmygff3/2.1
$ python3 -m venv /export/apps/emblmygff3/2.1/.venv
$ source /export/apps/emblmygff3/2.1/.venv/bin/activate
$ pip install --upgrade setuptools pip wheel
$ pip install git+https://github.com/NBISweden/EMBLmyGFF3.git@v2.1
$ sudo chown -R root:root /export/apps/emblmygff3