ILRI Research Computing

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====== EMBLmyGFF3 ======
An efficient way to convert gff3 annotation files into EMBL format ready to submit.

===== Information =====

  * Version: 2.1
  * Added: May, 2022
  * Link: https://github.com/NBISweden/EMBLmyGFF3

===== Usage =====

See versions which are available:
<code>$ module avail emblmygff3</code>

Load one version into your environment and run it:
<code>$ module load emblmygff3/2.1
$ EMBLmyGFF3</code>

===== Installation ======
Notes from the sysadmin during installation:

<code>$ sudo mkdir -p /export/apps/emblmygff3/2.1
$ sudo chown aorth:aorth /export/apps/emblmygff3/2.1
$ python3 -m venv /export/apps/emblmygff3/2.1/.venv
$ source /export/apps/emblmygff3/2.1/.venv/bin/activate
$ pip install --upgrade setuptools pip wheel
$ pip install git+https://github.com/NBISweden/EMBLmyGFF3.git@v2.1
$ sudo chown -R root:root /export/apps/emblmygff3</code>