drep-software
Table of Contents
drep
dRep is a python program for rapidly comparing large numbers of genomes. dRep can also "de-replicate" a genome set by identifying groups of highly similar genomes and choosing the best representative genome for each genome set.
Information
- Version: 2.5.4
- Added: March, 2020
Usage
See which versions of drep are available:
$ module avail drep
Load one version into your environment and run it:
$ module load drep/2.5.4 $ drep
Installation
Notes from the sysadmin during installation:
$ cd /tmp $ sudo mkdir -p /export/apps/drep/2.5.4 $ sudo chown aorth /export/apps/drep/2.5.4 $ python3.6 -m venv /export/apps/drep/2.5.4 $ source /export/apps/drep/2.5.4/bin/activate $ pip install --upgrade pip setuptools $ pip install drep==2.5.4 $ sudo chown -R root:root /export/apps/drep/2.5.4
drep-software.txt · Last modified: 2020/03/12 14:21 by aorth