ILRI Research Computing

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====== drep ======

dRep is a python program for rapidly comparing large numbers of genomes. dRep can also "de-replicate" a genome set by identifying groups of highly similar genomes and choosing the best representative genome for each genome set.

===== Information =====

  * Version: 2.5.4
  * Added: March, 2020
  * Link: https://github.com/MrOlm/drep

===== Usage =====

See which versions of drep are available:
<code>$ module avail drep</code>

Load one version into your environment and run it:
<code>$ module load drep/2.5.4
$ drep</code>

===== Installation ======

Notes from the sysadmin during installation:

<code>$ cd /tmp
$ sudo mkdir -p /export/apps/drep/2.5.4
$ sudo chown aorth /export/apps/drep/2.5.4
$ python3.6 -m venv /export/apps/drep/2.5.4
$ source /export/apps/drep/2.5.4/bin/activate
$ pip install --upgrade pip setuptools
$ pip install drep==2.5.4
$ sudo chown -R root:root /export/apps/drep/2.5.4</code>