Microbiome classification pipeline.

• Version: 1.4.0
• Added: March, 2022
• Link: https://github.com/vrmarcelino/CCMetagen/

See which versions are available:

$ module avail ccmetagen

Load one version into your environment and run it:

$ module load ccmetagen/1.4.0
$ CCMetagen.py

Notes from the sysadmin during installation:

$ sudo mkdir -p /export/apps/ccmetagen/1.4.0
$ sudo chown aorth /export/apps/ccmetagen/1.4.0
$ module load python/3.9
$ python -m venv /export/apps/ccmetagen/1.4.0
$ source /export/apps/ccmetagen/1.4.0/bin/activate
$ pip install --upgrade setuptools pip
$ pip install CCMetagen==1.4.0
$ pip install PyQT5 lxml
$ sudo chown -R root:root /export/apps/ccmetagen/1.4.0

Note this discussion about problems with PyQt4 in ete, which is a dependency of CCMetagen: https://github.com/etetoolkit/ete/issues/195