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ccmetagen-software

ccmetagen

Microbiome classification pipeline.

Information

Usage

See which versions are available:

$ module avail ccmetagen

Load one version into your environment and run it:

$ module load ccmetagen/1.4.0
$ CCMetagen.py

Installation

Notes from the sysadmin during installation:

$ sudo mkdir -p /export/apps/ccmetagen/1.4.0
$ sudo chown aorth /export/apps/ccmetagen/1.4.0
$ module load python/3.9
$ python -m venv /export/apps/ccmetagen/1.4.0
$ source /export/apps/ccmetagen/1.4.0/bin/activate
$ pip install --upgrade setuptools pip
$ pip install CCMetagen==1.4.0
$ pip install PyQT5 lxml
$ sudo chown -R root:root /export/apps/ccmetagen/1.4.0

Note this discussion about problems with PyQt4 in ete, which is a dependency of CCMetagen: https://github.com/etetoolkit/ete/issues/195

ccmetagen-software.txt · Last modified: 2022/03/14 13:15 by aorth