ILRI Research Computing

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====== ccmetagen ======
Microbiome classification pipeline.

===== Information =====

  * Version: 1.4.0
  * Added: March, 2022
  * Link: https://github.com/vrmarcelino/CCMetagen/

===== Usage =====

See which versions are available:
<code>$ module avail ccmetagen</code>

Load one version into your environment and run it:

<code>$ module load ccmetagen/1.4.0
$ CCMetagen.py</code>

===== Installation ======
Notes from the sysadmin during installation:

<code>$ sudo mkdir -p /export/apps/ccmetagen/1.4.0
$ sudo chown aorth /export/apps/ccmetagen/1.4.0
$ module load python/3.9
$ python -m venv /export/apps/ccmetagen/1.4.0
$ source /export/apps/ccmetagen/1.4.0/bin/activate
$ pip install --upgrade setuptools pip
$ pip install CCMetagen==1.4.0
$ pip install PyQT5 lxml
$ sudo chown -R root:root /export/apps/ccmetagen/1.4.0</code>

Note this discussion about problems with PyQt4 in ete, which is a dependency of CCMetagen: https://github.com/etetoolkit/ete/issues/195