The purpose of CAFE is to analyze changes in gene family size in a way that accounts for phylogenetic history and provides a statistical foundation for evolutionary inferences.

• Version: 4.1
• Added: June, 2018
• Link: https://hahnlab.github.io/CAFE/index.html

See versions of cafe which are available:

$ module avail cafe

Load the latest version into your environment and print help:

$ module load cafe/4.1
$ cafe

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://github.com/hahnlab/CAFE/releases/download/v4.1/CAFE-4.1.tar.gz
$ tar xf CAFE-4.1.tar.gz
$ cd CAFE
$ ./configure --prefix=/export/apps/cafe/4.1
$ make USE_READLINE=1
$ sudo mkdir -p /export/apps/cafe/4.1/bin
$ sudo cp release/cafe /export/apps/cafe/4.1/bin
$ sudo cp -r docs example LICENSE README.md /export/apps/cafe/4.1