ILRI Research Computing

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====== cafe ======
The purpose of CAFE is to analyze changes in gene family size in a way that accounts for phylogenetic history and provides a statistical foundation for evolutionary inferences.

===== Information =====

  * Version: 4.1
  * Added: June, 2018
  * Link: https://hahnlab.github.io/CAFE/index.html

===== Usage =====

See versions of cafe which are available:
<code>$ module avail cafe</code>

Load the latest version into your environment and print help:
<code>$ module load cafe/4.1
$ cafe</code>

===== Installation ======
Notes from the sysadmin during installation:

<code>$ cd /tmp
$ wget https://github.com/hahnlab/CAFE/releases/download/v4.1/CAFE-4.1.tar.gz
$ tar xf CAFE-4.1.tar.gz
$ cd CAFE
$ ./configure --prefix=/export/apps/cafe/4.1
$ make USE_READLINE=1
$ sudo mkdir -p /export/apps/cafe/4.1/bin
$ sudo cp release/cafe /export/apps/cafe/4.1/bin
$ sudo cp -r docs example LICENSE README.md /export/apps/cafe/4.1</code>