AdapterRemoval removes residual adapter sequences from next generation sequencing reads. The program handles both single end and paired end data.

• Version: 1.5.4
• Added: September, 2014
• Link: AdapterRemoval

module avail AdapterRemoval

Notes from the sysadmin during installation:

git clone https://github.com/slindgreen/AdapterRemoval
cd AdapterRemoval
tar xf AdapterRemoval-1.5.4.tar.gz
cd AdapterRemoval-1.5.4
scl enable devtoolset-1.1 bash
make
sudo mkdir -p /export/apps/AdapterRemoval/1.5.4/bin
sudo mkdir -p /export/apps/AdapterRemoval/1.5.4/share/man/man1
sudo cp AdapterRemoval /export/apps/AdapterRemoval/1.5.4/bin
sudo cp AdapterRemoval.1 /export/apps/AdapterRemoval/1.5.4/share/man/man1