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adapterremoval-software

AdapterRemoval

AdapterRemoval removes residual adapter sequences from next generation sequencing reads. The program handles both single end and paired end data.

Information

Usage

See versions of AdapterRemoval which are available:

$ module avail AdapterRemoval

Load one version into your environment and run it:

$ module load AdapterRemoval/2.3.1
$ AdapterRemoval

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://github.com/MikkelSchubert/adapterremoval/archive/v2.3.1.tar.gz
$ tar xf v2.3.1.tar.gz
$ cd adapterremoval-2.3.1
$ make
$ sudo mkdir -p /export/apps/AdapterRemoval/2.3.1
$ sudo chown aorth /export/apps/AdapterRemoval/2.3.1
$ make PREFIX=/export/apps/AdapterRemoval/2.3.1 install
$ sudo chown -R root:root /export/apps/AdapterRemoval/2.3.1
adapterremoval-software.txt · Last modified: 2020/08/22 15:10 by aorth