ILRI Research Computing

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====== AdapterRemoval ======
AdapterRemoval removes residual adapter sequences from next generation sequencing reads. The program handles both single end and paired end data.

===== Information =====

  * Version: 2.3.1
  * Added: September, 2014
  * Updated: August, 2020
  * Link: https://github.com/MikkelSchubert/adapterremoval

===== Usage =====

See versions of AdapterRemoval which are available:
<code>$ module avail AdapterRemoval</code>

Load one version into your environment and run it:

<code>$ module load AdapterRemoval/2.3.1
$ AdapterRemoval</code>

===== Installation ======
Notes from the sysadmin during installation:

<code>$ cd /tmp
$ wget https://github.com/MikkelSchubert/adapterremoval/archive/v2.3.1.tar.gz
$ tar xf v2.3.1.tar.gz
$ cd adapterremoval-2.3.1
$ make
$ sudo mkdir -p /export/apps/AdapterRemoval/2.3.1
$ sudo chown aorth /export/apps/AdapterRemoval/2.3.1
$ make PREFIX=/export/apps/AdapterRemoval/2.3.1 install
$ sudo chown -R root:root /export/apps/AdapterRemoval/2.3.1</code>