velvet-software
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| velvet-software [2017/09/25 12:25] – [Information] aorth | velvet-software [2017/09/25 12:26] – [Usage] aorth | ||
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| Line 12: | Line 12: | ||
| ===== Usage ===== | ===== Usage ===== | ||
| - | === See versions of velvet which are available | + | See versions of velvet which are available: |
| - | < | + | < |
| === Memory Estimating === | === Memory Estimating === | ||
| Line 20: | Line 20: | ||
| * http:// | * http:// | ||
| - | Make sure you substitute in the correct value for " | + | Make sure you substitute in the correct value for " |
| === Extra information === | === Extra information === | ||
| Line 28: | Line 28: | ||
| Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
| - | < | + | < |
| - | tar xf velvet_1.2.10.tgz | + | $ wget wget https:// |
| - | cd velvet_1.2.10 | + | $ tar xf velvet_1.2.10.tgz |
| - | scl enable devtoolset-1.1 bash | + | $ cd velvet_1.2.10 |
| - | sed ' | + | $ scl enable devtoolset-4 bash |
| - | make -f Makefile.kmer64 | + | $ sed -i ' |
| - | make -f Makefile.kmer64 | + | $ make OPENMP=1 |
| - | sudo cp -r . / | + | $ make cleanobj |
| + | $ sudo cp -r . / | ||
velvet-software.txt · Last modified: 2017/09/25 12:27 by aorth