velvet-software
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Table of Contents
Velvet
Sequence assembler for very short reads.
Information
- Version: 1.2.10-kmer111
- MAXKMERLENGTH: 111
- Added: November, 2012
- Updated: September, 2017
Usage
See versions of velvet which are available
module avail velvet
Memory Estimating
The following tool may be helpful in estimating memory requirements for your velvet run:
Make sure you substitute in the correct value for "k" based on the MAXKMERLENGTH used in your Velvet build.
Extra information
Installation
Notes from the sysadmin during installation:
wget https://www.ebi.ac.uk/~zerbino/velvet/velvet_1.2.10.tgz tar xf velvet_1.2.10.tgz cd velvet_1.2.10 scl enable devtoolset-1.1 bash sed 's/MAXKMERLENGTH=[0-9].*$/MAXKMERLENGTH=64/' Makefile > Makefile.kmer64 make -f Makefile.kmer64 make -f Makefile.kmer64 cleanobj sudo cp -r . /export/apps/velvet/1.2.10-kmer64
velvet-software.1506342331.txt.gz · Last modified: 2017/09/25 12:25 by aorth