velvet-software
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Table of Contents
Velvet
Sequence assembler for very short reads.
Information
- Version: 1.2.10-kmer111
- MAXKMERLENGTH: 111
- Added: November, 2012
- Updated: September, 2017
Usage
See versions of velvet which are available:
$ module avail velvet
Memory Estimating
The following tool may be helpful in estimating memory requirements for your velvet run:
Make sure you substitute in the correct value for "k" based on the MAXKMERLENGTH
used in your Velvet build (see information above).
Extra information
Installation
Notes from the sysadmin during installation:
$ cd /tmp $ wget wget https://www.ebi.ac.uk/~zerbino/velvet/velvet_1.2.10.tgz $ tar xf velvet_1.2.10.tgz $ cd velvet_1.2.10 $ scl enable devtoolset-4 bash $ sed -i 's/MAXKMERLENGTH=[0-9].*$/MAXKMERLENGTH=111/' Makefile $ make OPENMP=1 $ make cleanobj $ sudo cp -r . /export/apps/velvet/1.2.10-kmer111
velvet-software.1506342405.txt.gz · Last modified: 2017/09/25 12:26 by aorth