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transabyss-software

transabyss

De novo assembly of RNAseq data using ABySS.

Information

Usage

See which versions are available:

$ module avail transabyss

Load one version into your environment and run it:

$ module load transabyss/2.0.1
$ transabyss

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://github.com/bcgsc/transabyss/releases/download/2.0.1/transabyss-2.0.1.zip
$ unzip transabyss-2.0.1.zip
$ sudo mkdir -p /export/apps/transabyss/2.0.1
$ sudo chown aorth /export/apps/transabyss/2.0.1
$ module load python/3.9
$ python -m venv /export/apps/transabyss/2.0.1/.venv
$ source /export/apps/transabyss/2.0.1/.venv/bin/activate
$ python -m pip install --upgrade pip setuptools wheel
$ python -m pip install python-igraph
$ cp -r . /export/apps/transabyss/2.0.1
transabyss-software.txt · Last modified: 2023/01/24 08:33 by aorth