SOAPsnp is a member of the SOAP (Short Oligonucleotide Analysis Package). Despite its name, the program is a resequencing utility that can assemble consensus sequence for the genome of a newly sequenced individual based on the alignment of the raw sequencing reads on the known reference.

• Version: 1.03
• Added: March, 2018
• Link: http://soap.genomics.org.cn/soapsnp.html

See which versions of SOAPsnp are available:

$ module avail SOAPsnp

Load a version of SOAPsnp into your environment and run it:

$ module load SOAPsnp/1.03
$ soapsnp

Notes from the sysadmin during installation:

$ wget http://soap.genomics.org.cn/down/SOAPsnp-v1.03.tar.gz
$ tar xf SOAPsnp-v1.03.tar.gz
$ cd SOAPsnpZ
$ make
$ sudo mkdir -p /export/apps/SOAPsnp/1.03/bin
$ sudo cp soapsnp /export/apps/SOAPsnp/1.03/bin
$ sudo cp COPYING readme release /export/apps/SOAPsnp/1.03