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SOAPsnp is a member of the SOAP (Short Oligonucleotide Analysis Package). Despite its name, the program is a resequencing utility that can assemble consensus sequence for the genome of a newly sequenced individual based on the alignment of the raw sequencing reads on the known reference.



See which versions of SOAPsnp are available:

$ module avail SOAPsnp

Load a version of SOAPsnp into your environment and run it:

$ module load SOAPsnp/1.03
$ soapsnp


Notes from the sysadmin during installation:

$ wget
$ tar xf SOAPsnp-v1.03.tar.gz
$ cd SOAPsnpZ
$ make
$ sudo mkdir -p /export/apps/SOAPsnp/1.03/bin
$ sudo cp soapsnp /export/apps/SOAPsnp/1.03/bin
$ sudo cp COPYING readme release /export/apps/SOAPsnp/1.03
soapsnp-software.txt · Last modified: 2018/03/26 21:00 by aorth