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snpeff-software

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SnpEff

SnpEff is a variant annotation and effect prediction tool. It annotates and predicts the effects of variants on genes (such as amino acid changes).

SnpSift is a toolbox that allows you to filter and manipulate annotated files.

Information

Usage

See which versions of are available:

$ module avail snpeff

Load one into your environment and run it:

$ module load snpeff/5.1
$ snpeff

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://snpeff.blob.core.windows.net/versions/snpEff_latest_core.zip
$ sudo mkdir -p /export/apps/snpeff/5.1
$ sudo cp -r snpEff/* /export/apps/snpeff/5.1
snpeff-software.txt · Last modified: 2023/06/12 17:49 by aorth