De novo assembly from Oxford Nanopore reads.

• Version: 0.3.0
• Added: September, 2019
• Updated: November, 2019
• Link: https://github.com/chanzuckerberg/shasta

See versions of shasta which are available:

$ module avail shasta

Load one version into your environment and run it:

$ module load shasta/0.3.0
$ shasta

Note: Please use the --threads option to limit the number of threads launched by shasta to be the same amount as in your SLURM sbatch allocation. See the shasta documentation for more information.

Notes from the sysadmin during installation:

$ cd /tmp
$ sudo mkdir -p /export/apps/shasta/0.3.0/bin
$ sudo chown aorth /export/apps/shasta/0.3.0/bin
$ wget https://github.com/chanzuckerberg/shasta/releases/download/0.3.0/shasta-Linux-0.3.0 -O /export/apps/shasta/0.3.0/bin/shasta
$ chmod +x /export/apps/shasta/0.2.0/bin/shasta
$ sudo chown root:root /export/apps/shasta/0.3.0/bin/shasta