shasta-software
Table of Contents
shasta
De novo assembly from Oxford Nanopore reads.
Information
- Version: 0.4.0
- Added: September, 2019
- Updated: March, 2020
Usage
See versions of shasta which are available:
$ module avail shasta
Load one version into your environment and run it:
$ module load shasta/0.4.0 $ shasta
Note: Please use the --threads
option to limit the number of threads launched by shasta to be the same amount as in your SLURM sbatch allocation. See the shasta documentation for more information.
Installation
Notes from the sysadmin during installation:
$ cd /tmp $ sudo mkdir -p /export/apps/shasta/0.4.0/bin $ sudo wget https://github.com/chanzuckerberg/shasta/releases/download/0.4.0/shasta-Linux-0.4.0 -O /export/apps/shasta/0.4.0/bin/shasta $ sudo chmod +x /export/apps/shasta/0.4.0/bin/shasta
shasta-software.txt · Last modified: 2020/03/15 11:19 by aorth