shapeit-software
Table of Contents
shapeit
SHAPEIT is a fast and accurate method for estimation of haplotypes (aka phasing) from genotype or sequencing data.
Information
- Version: 2.904
- Added: July, 2023
Usage
See which versions are available:
$ module avail shapeit
Load one version into your environment and run it:
$ module load shapeit/2.904 $ shapeit --help
Installation
Notes from the sysadmin during installation:
$ cd /tmp $ wget https://mathgen.stats.ox.ac.uk/genetics_software/shapeit/shapeit.v2.r904.glibcv2.17.linux.tar.gz $ sudo mkdir -p /export/apps/shapeit/2.904 $ sudo cp -r shapeit.v2.904.3.10.0-693.11.6.el7.x86_64/* /export/apps/shapeit/2.904
shapeit-software.txt · Last modified: 2023/07/10 06:26 by aorth