samtools-software
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samtools-software [2017/02/05 11:38] – joguya | samtools-software [2017/12/24 14:38] – aorth | ||
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samtools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format. | samtools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format. | ||
- | * Latest Version: 1.3.1 | + | * Latest Version: 1.6 |
- | * Updated: February, 2017 | + | |
* Added: February, 2015 | * Added: February, 2015 | ||
- | * Link: http:// | + | |
+ | | ||
===== Usage ===== | ===== Usage ===== | ||
Line 14: | Line 14: | ||
Load a particular version of samtools: | Load a particular version of samtools: | ||
- | < | + | < |
===== Installation ===== | ===== Installation ===== | ||
Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
- | < | + | < |
- | $ cd /tmp | + | $ wget https:// |
- | $ wget -qO- "https:// | + | $ tar xf samtools-1.6.tar.bz2 |
- | $ cd samtools-1.3.1/ | + | $ cd samtools-1.6 |
- | $ scl enable devtoolset-2 bash | + | $ ./configure --enable-plugins --enable-libcurl --prefix=/ |
- | $ sudo mkdir / | + | $ make all all-htslib |
- | $ sudo chown -R joguya: | + | $ sudo mkdir / |
- | $ ./configure --enable-plugins --enable-libcurl | + | $ sudo chown aorth / |
- | $ make all install-htslib | + | |
$ make install install-htslib | $ make install install-htslib | ||
- | $ sudo chown -R root:root / | + | $ sudo chown -R root:root / |
- | </ | + |
samtools-software.txt · Last modified: 2022/06/23 09:35 by aorth