samtools-software
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Table of Contents
samtools
samtools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.
- Latest Version: 1.3.1
- Updated: February, 2017
- Added: February, 2015
- Link: http://www.htslib.org/
Usage
Show all available versions of samtools:
$ module avail samtools
Load a particular version of samtools:
$ module load samtools/1.3.1
Installation
Notes from the sysadmin during installation:
$ cd /tmp $ wget -qO- "https://github.com/samtools/samtools/releases/download/1.3.1/samtools-1.3.1.tar.bz2" | tar xjv $ cd samtools-1.3.1/ $ scl enable devtoolset-2 bash $ sudo mkdir /export/apps/samtools/1.3.1 $ sudo chown -R joguya:joguya /export/apps/samtools/1.3.1 $ ./configure --enable-plugins --enable-libcurl --with-plugin-path=$PWD/htslib-1.3.1 --prefix=/export/apps/samtools/1.3.1 $ make all install-htslib $ make install install-htslib $ sudo chown -R root:root /export/apps/samtools/1.3.1
samtools-software.1486294723.txt.gz · Last modified: 2017/02/05 11:38 by joguya