samtools-software
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Table of Contents
samtools
samtools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.
- Latest Version: 1.6
- Added: February, 2015
- Updated: December, 2017
- Link: http://www.htslib.org
Usage
Show all available versions of samtools:
$ module avail samtools
Load a particular version of samtools:
$ module load samtools/1.6
Installation
Notes from the sysadmin during installation:
$ cd /tmp $ wget https://github.com/samtools/samtools/releases/download/1.6/samtools-1.6.tar.bz2 $ tar xf samtools-1.6.tar.bz2 $ cd samtools-1.6 $ ./configure --enable-plugins --enable-libcurl --prefix=/export/apps/samtools/1.6 $ make all all-htslib $ sudo mkdir /export/apps/samtools/1.6 $ sudo chown aorth /export/apps/samtools/1.6 $ make install install-htslib $ sudo chown -R root:root /export/apps/samtools/1.6
samtools-software.1514126326.txt.gz · Last modified: 2017/12/24 14:38 by aorth