salmon-software
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salmon-software [2016/11/03 12:32] – [Installation] joguya | salmon-software [2020/10/28 09:11] (current) – aorth | ||
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====== salmon ====== | ====== salmon ====== | ||
- | |||
Salmon is a tool for fast transcript quantification from RNA-seq data. It requires a set of target transcripts (either from a reference or de-novo assembly) to quantify. | Salmon is a tool for fast transcript quantification from RNA-seq data. It requires a set of target transcripts (either from a reference or de-novo assembly) to quantify. | ||
===== Information ===== | ===== Information ===== | ||
- | * Latest Version: | + | * Latest Version: |
* Added: September, 2016 | * Added: September, 2016 | ||
- | * Link: http:// | + | |
+ | | ||
===== Usage ===== | ===== Usage ===== | ||
See which versions of salmon are available: | See which versions of salmon are available: | ||
- | < | + | < |
- | </ | + | |
- | Load salmon | + | Load one version of salmon |
- | < | + | < |
+ | $ salmon</ | ||
===== Installation ====== | ===== Installation ====== | ||
- | |||
Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
- | < | + | < |
- | $ cd /tmp | + | $ wget https:// |
- | $ wget https:// | + | $ tar xf salmon-1.3.0_linux_x86_64.tar.gz |
- | $ tar -xvf Salmon-0.7.2_linux_x86_64.tar.gz | + | $ sudo cp -r salmon-latest_linux_x86_64 |
- | $ sudo mkdir -p / | + | |
- | $ sudo cp -r * / | + | |
</ | </ |
salmon-software.1478176378.txt.gz · Last modified: 2016/11/03 12:32 by joguya