Salmon is a tool for fast transcript quantification from RNA-seq data. It requires a set of target transcripts (either from a reference or de-novo assembly) to quantify.
See which versions of salmon are available:
$ module avail salmon
Load one version of salmon into your environment and run it:
$ module load salmon/1.3.0 $ salmon
Notes from the sysadmin during installation:
$ cd /tmp $ wget https://github.com/COMBINE-lab/salmon/releases/download/v1.3.0/salmon-1.3.0_linux_x86_64.tar.gz $ tar xf salmon-1.3.0_linux_x86_64.tar.gz $ sudo cp -r salmon-latest_linux_x86_64 /export/apps/salmon/1.3.0