Salmon is a tool for fast transcript quantification from RNA-seq data. It requires a set of target transcripts (either from a reference or de-novo assembly) to quantify.

• Latest Version: 0.7.2
• Added: September, 2016
• Link: http://salmon.readthedocs.io/en/latest/salmon.html

See which versions of salmon are available:

$ module avail salmon

Load salmon

$ module load salmon/0.7.2

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://github.com/COMBINE-lab/salmon/releases/download/v0.7.2/Salmon-0.7.2_linux_x86_64.tar.gz
$ tar -xvf Salmon-0.7.2_linux_x86_64.tar.gz
$ sudo mkdir -p /export/apps/salmon/0.7.2/
$ sudo cp -r * /export/apps/salmon/0.7.2/