Differences

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--- salmon-software [2016/11/03 12:32] – [Installation] joguya
+++ salmon-software [2020/10/28 09:11] (current) – aorth
@@ Line 1: / Line 1: @@
 ====== salmon ======
 Salmon is a tool for fast transcript quantification from RNA-seq data. It requires a set of target transcripts (either from a reference or de-novo assembly) to quantify.
 ===== Information =====
-  * Latest Version: 0.7.2
+  * Latest Version: 1.3.0
   * Added: September, 2016
-  * Link: http://salmon.readthedocs.io/en/latest/salmon.html
+  * Updated: October, 2020
+  * Link: https://salmon.readthedocs.io/en/latest/salmon.html
 ===== Usage =====
 See which versions of salmon are available:
-<code>$ module avail salmon
+<code>$ module avail salmon</code>
-</code>
-Load salmon
+Load one version of salmon into your environment and run it:
-<code>$ module load salmon/0.7.2</code>
+<code>$ module load salmon/1.3.0
+$ salmon</code>
 ===== Installation ======
 Notes from the sysadmin during installation:
-<code>
+<code>$ cd /tmp
-$ cd /tmp
+$ wget https://github.com/COMBINE-lab/salmon/releases/download/v1.3.0/salmon-1.3.0_linux_x86_64.tar.gz
-$ wget https://github.com/COMBINE-lab/salmon/releases/download/v0.7.2/Salmon-0.7.2_linux_x86_64.tar.gz
+$ tar xf salmon-1.3.0_linux_x86_64.tar.gz
-$ tar -xvf Salmon-0.7.2_linux_x86_64.tar.gz
+$ sudo cp -r salmon-latest_linux_x86_64  /export/apps/salmon/1.3.0
-$ sudo mkdir -p /export/apps/salmon/0.7.2/
-$ sudo cp -r * /export/apps/salmon/0.7.2/
 </code>