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rmblast-software

rmblast

RMBlast is a RepeatMasker compatible version of the standard NCBI BLAST suite. The primary difference between this distribution and the NCBI distribution is the addition of a new program "rmblastn" for use with RepeatMasker and RepeatModeler.

Information

Usage

See versions of rmblast which are available:

$ module avail rmblast

Load one version into your environment and run it:

$ module load rmblast/2.11.0
$ blastn

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget http://www.repeatmasker.org/rmblast-2.11.0+-x64-linux.tar.gz
$ tar xf rmblast-2.11.0+-x64-linux.tar.gz
$ sudo cp -r rmblast-2.11.0 /export/apps/rmblast/2.11.0
rmblast-software.txt · Last modified: 2021/03/16 13:18 by aorth