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RepeatModeler is a de novo transposable element (TE) family identification and modeling package. At the heart of RepeatModeler are three de-novo repeat finding programs ( RECON, RepeatScout and LtrHarvest/Ltr_retriever ) which employ complementary computational methods for identifying repeat element boundaries and family relationships from sequence data.



See versions of repeatmodeler which are available:

$ module avail repeatmodeler

Load one version into your environment and run it:

$ module load repeatmasker/2.0.1
$ RepeatModeler


Notes from the sysadmin during installation:

$ cd /tmp
$ wget
$ tar xf RepeatModeler-2.0.1.tar.gz 
$ cd RepeatModeler-2.0.1
$ sudo yum install perl-File-Which.noarch
$ perl ./configure
$ sudo mkdir -p /export/apps/repeatmodeler/2.0.1
$ sudo cp -r * /export/apps/repeatmodeler/2.0.1
repeatmodeler-software.txt · Last modified: 2021/03/17 16:46 by aorth