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RDP Classifier

RDP Classifier is a naive Bayesian classifier that can rapidly and accurately provides taxonomic assignments from domain to genus, with confidence estimates for each assignment.



See versions of RDP Classifier which are available:

$ module avail rdp-classifier

Load and run RDP Classifier:

$ module load rdp-classifier/2.11
$ rdp-classifier


Notes from the sysadmin during installation:

$ cd /tmp
$ wget "" -O
$ unzip
$ cd rdp_classifier_2.11
$ ant jar
$ sudo mkdir -p /export/apps/rdp-classifier/2.11
$ sudo cp -rv . /export/apps/rdp-classifier/2.11/

I created a wrapper shell script named rdp-classifier to run RDP Classifier, otherwise, you have to specify a path to classifier.jar — java -jar .. — which is unfriendly: /export/apps/rdp-classifier/2.11/rdp-classifier

#!/usr/bin/env bash

readonly PREFIX=$(dirname $0)
java -jar $PREFIX/dist/classifier.jar $*
rdp-classifier-software.txt · Last modified: 2015/09/15 09:37 by joguya