RDP Classifier is a naive Bayesian classifier that can rapidly and accurately provides taxonomic assignments from domain to genus, with confidence estimates for each assignment.

• Version: 2.11
• Added: September, 2015
• Link: http://rdp.cme.msu.edu/

See versions of RDP Classifier which are available:

$ module avail rdp-classifier

Load and run RDP Classifier:

$ module load rdp-classifier/2.11
$ rdp-classifier

Notes from the sysadmin during installation:

$ cd /tmp
$ wget "http://downloads.sourceforge.net/project/rdp-classifier/rdp-classifier/rdp_classifier_2.11.zip?r=&ts=1442297515&use_mirror=liquidtelecom" -O rdp_classifier_2.11.zip
$ unzip rdp_classifier_2.11.zip
$ cd rdp_classifier_2.11
$ ant jar
$ sudo mkdir -p /export/apps/rdp-classifier/2.11
$ sudo cp -rv . /export/apps/rdp-classifier/2.11/

I created a wrapper shell script named rdp-classifier to run RDP Classifier, otherwise, you have to specify a path to classifier.jar — java -jar .. — which is unfriendly: /export/apps/rdp-classifier/2.11/rdp-classifier

#!/usr/bin/env bash

readonly PREFIX=$(dirname $0)
java -jar $PREFIX/dist/classifier.jar $*