Rcorrector(RNA-seq error CORRECTOR) is a kmer-based error correction method for RNA-seq data.

Rcorrector can also be applied to other type of sequencing data where the read coverage is non-uniform, such as single-cell sequencing.

• Version: 1.0.5
• Added: January, 2023
• Link: https://github.com/mourisl/Rcorrector

See versions which are available:

$ module avail rcorrector

Load one version into your environment and run it:

$ module load rcorrector/1.0.5
$ rcorrector

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://github.com/mourisl/Rcorrector/archive/refs/tags/v1.0.5.tar.gz
$ tar xf v1.0.5.tar.gz 
$ cd Rcorrector-1.0.5
$ make
$ chmod +x run_rcorrector.pl
$ sudo mkdir -p /export/apps/rcorrector/1.0.5/bin
$ sudo cp rcorrector jellyfish/bin/jellyfish run_rcorrector.pl /export/apps/rcorrector/1.0.5/bin