Rcorrector(RNA-seq error CORRECTOR) is a kmer-based error correction method for RNA-seq data.
Rcorrector can also be applied to other type of sequencing data where the read coverage is non-uniform, such as single-cell sequencing.
- Version: 1.0.5
- Added: January, 2023
See versions which are available:
$ module avail rcorrector
Load one version into your environment and run it:
$ module load rcorrector/1.0.5 $ rcorrector
Notes from the sysadmin during installation:
$ cd /tmp $ wget https://github.com/mourisl/Rcorrector/archive/refs/tags/v1.0.5.tar.gz $ tar xf v1.0.5.tar.gz $ cd Rcorrector-1.0.5 $ make $ chmod +x run_rcorrector.pl $ sudo mkdir -p /export/apps/rcorrector/1.0.5/bin $ sudo cp rcorrector jellyfish/bin/jellyfish run_rcorrector.pl /export/apps/rcorrector/1.0.5/bin